Step-by-step instructions for running an AIDA workflow from Taverna
Following this example will reproduce the ‘disease discovery’ AIDA demo that was shown at ISMB/ECCB2007:
- Download, install, and run Taverna
- File -> Open workflow location…Paste this URL in: http://adaptivedisclosure.org/AIDAToolkit/BioAID_DiseaseDiscovery.xml
- File -> Run workflow…
- Select query_string (left, under Input Document)
- Click “New Input”
- Replace “Some input data goes here” with your favorite query, for example: “EZH2″
- Scroll (ALL THE WAY) down to the bottom and click on the “Run workflow” button.
- Bring main Taverna window back to front (click on it) to view the results.
- Click on the results tab to view the results.
The above workflow was part of a demonstration of the AIDA toolkit at ISMB/ECCB2007 by Marco Roos and M. Scott Marshall. Video of the last 16 minutes of the demo is available here.
Documentation of our web services is on the way..
Many thanks to Hideaki SUGAWARA, Director of the Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics for providing the OMIM web service that is used in the above workflow.
See also: the WSDL List from XML Central of DDBJ
For more information, please contact marshall at science.uva.nl